23 June 2010 0 Comments

What? You want to do this the hard way?

Since we are a bit ZFN crazy right now with the airing of our ZFN Webinars, we wanted to feature the newest product based on the zinc finger nuclease technology, the CompoZr® Targeted Integration Kit (AAVS1).

Of course, you may have reasons why this kit isn’t for you so we think it is time for a top 5 list, our first on SigmaBioBlogs.

Reasons NOT to use the CompoZr Targeted Integration Kit:
1. You aren’t in a hurry to publish your results.
We are talking about the possibility of getting rapid biallelic insertion through a single transfection in as little as 48 hours….

2. You don’t mind inefficiency.
Genome editing using homologous recombination has served the research community well for the past two decades but it is highly inefficient.  A one in a million event, this method also requires sophisticated selection strategies.  The well-validated ZFNs within the CompoZr Targeted Integration Kit cut the DNA with high efficiency at the AAVS1 site.  The success rate is up to 3 to 4 orders of magnitude higher than spontaneous homologous recombination events.

3. You want varied expression levels and stability.
Previous methods to create transgenic cell lines use random integration of a plasmid.  The result is greatly varied expression levels and expression stability.  Use of a single genomic locus means stable, uniform expression levels.  We chose the AAVS1 site, a safe harbor locus that is ubiquitously expressed and its disruption leads to no adverse effects on the cell.

4. You like complexity.
We all know people like this and you may be one of them.  You can’t help but give a dissertation when a simple Yes/No answer would have sufficed.  If this is you, then this kit is just too simple for your taste.  Gene integration is at a single endogenous locus. The need to engineer cell lines with transgene landing pads is eliminated.  I mean, come on, that was the fun part, right?

5. You want us to design a custom ZFN!
We didn’t believe your other excuses but this is a reason we can rally behind.  We can rapidly design, assemble and validate a ZFN pair targeting YOUR gene of interest.

Now that we’ve established that reasons 1-4 don’t apply in your case, let’s go back to #1.  You DO want to be the first to discovery (this is what we love about you).  Did you know that the recently released Targeted Integration Kit could have been in your hands a year ago?  Participants in our Validation Testing Program obtain early access to some of our coolest products!

Read what one tester had to say about the program:
I was impressed by the validation testing program for a number of reasons. I had frequent and prolonged phone and email conversations with multiple scientists at Sigma and they listened intently to my input. Further, they went back and redesigned the kit a few times, trying to address where we (and others) had problems. It was clear to me that Sigma very stringently tested this kit to make sure that it will work as advertised.

Researchers who tested the CompoZr Targeted Integration Kit conducted our desired protocol using just 1/5 of the kit!  That is a lot of remaining product for your research.  Also, rapid responders receive incentives (such as gift cards) in addition to free product.  Find out more!

21 May 2010 0 Comments

Knock your genes off… I mean OUT!

What would you say is as exciting as offering a novel game-changing technology?  Learning about that technology from the talented individual who helped to shape it!  Sigma Life Science is fortunate enough to have Dr. Trevor Collingwood as a member of the team.  Formerly of Sangamo Biosciences, Dr. Collingwood led the Enabling Technologies Group, focusing on development of the zinc finger nuclease platform for genome engineering.

If you are asking the question “What are zinc finger nucleases?” then you are in luck!   Sigma Life Science has created a series of FREE, live online seminars to introduce you to the technology and to delve into specific applications of zinc finger nucleases.

If you missed the introductory webinar held on May 6, the recorded webinar Introduction to Zinc Finger Nuclease Technology will be available for you to experience at your convenience.  We spent 30 minutes listening and this is just a taste of what we learned.

1.  What are ZFNs?
ZFNs are engineered DNA-binding proteins that act as “genomic scissors” to create a highly targeted double strand break in genomic DNA at any specified locus. The double strand break is repaired by the cell, leading to gene knockout or gene modification only at the intended locus. This technology will knock your genes right off!

2.  Design consideration
A two pronged approach of bioinformatics and protein engineering maximizes the specificity of ZFNs. A sophisticated algorithm is used to look for unique sites within the genome (target sequences that do not have homologous sequences even with 1-4 base pair mismatches) and avoid regions such as repeat elements, SNPs and splice variations. The Fok I nuclease is also engineered to function only when two different zinc finger nucleases come together, increasing specificity. Nothing like a clean break!

3.  Using ZFNs
Dr. Collingwood will cover the various applications of Zinc finger nucleases for targeted gene knockout and target integration.  The overall advantages for using zinc finger nuclease technology in both approaches include: modification of endogenous loci, ZFNs expressed transiently, no selection required (it is that specific!) and monoallelic or multi-allelic disruption/insertion.

Are you ready for more advanced topics in Zinc Finger Nuclease Applications? Of course you are.

May 27, 2010 - Gene Knockout in Cell Lines
Dr. Collingwood provides examples of both single and multiple gene knockouts drawing from work with transformed cell lines, primary human cells and multi-potent stem cells.
9 AM Central Time
4 PM Central Time

June 15, 2010 – Targeted Gene Integration
Join Dr. Collingwood for a discussion of various applications of gene integration including gene tagging (such as infusing GFP directly to the endogenous gene) and modification at the endogenous locus to recreate or correct disease-related mutations.
9 AM Central Time
4 PM Central Time

Register to attend the live webinars or check back at sigma.com/zfnwebinar for the recording to be posted.  We hope to have the recording of the first webinar posted soon.  Until then, check out this video on ZFNs.

TargetedGenomeEditing Knock your genes off... I mean OUT!

CompoZr ZFN Technology for Targeted Genome Editing

16 March 2010 0 Comments

John Rinn, Bioextreme

John Rinn is an Associate Professor at Harvard Medical School, but not like the professors I remember.   Those guys were 40 years older than me, and their knowledge was gained from 20-30 years in the lab.  John Rinn knows cool skater and snowboarder lingo (moguls, lines, turns, trix), is the same age as me, and his bioknowledge comes from playing with new technologies to demonstrate the unthinkable.

JR Best photo John Rinn, Bioextreme

His Nature publication on LincRNAs (large intervening non-coding RNAs)  has RNA experts divided over whether or not non-coding RNA’s are functional.   By developing technology to look closely at non-coding RNA’s, his lab has identified over 5000 LincRNAs (large intervening non-coding RNAs).  They are functioning RNA’s that play a part in cell cycle regulation, and maintaining embryonic stem cell pluripotency.  Dr. Rinn is also investigating epigenetic aspects, which he describes as Genomic Origami.

The beginning of bio for Rinn was not a direct path.  He chose a university based on its proximity to mountains for snowboarding…and his life long hero is middle to long distance runner Steve Prefontaine…whose motto is “To give anything less than your best is to sacrifice the gift”

Thanks to his passion for new types of runs in snowboarding, Rinn injured himself and was bound to a hospital bed, and that’s where science really started to open up for him.

rinn.kmcrop John Rinn, Bioextreme

John Rinn gets some air

WBB: Where does Bio Begin for you?

JR: With coffee!  I spend 9-10am typically as an hour of reflection.

WBB: Interesting.  I’ve heard it said by more than one scientist that downtime is when great breakthroughs and ideas happen. Is that true for you?

JR: Yes. I actually get the best ideas when I go snowboarding.  It’s then that I have the time for my mind to drift, and dream up new experiments.

WBB: So you feel that snowboarding and science go well together?

JR: Yes…In snowboarding, if you do the same thing over and over again…it just gets old.  So you try different combinations of tricks…from a cliff to a mogul through trees to another mogul then jump off a cliff…that makes a beautiful run.  It’s the same with experimentation, except this time instead of looking for lines down the mountain you are trying to uncover beauty and truth by combining different experiments.  One experiment is not the key, it’s the “line of experiments”.  You need a combination that is synergistic.

WBB: So snowboarding and science do have a lot in common!

JR: Yes! And pain is always a part of the learning.  In snowboarding it’s injuries.  In science it’s in negative experiments.

WBB: Be careful out there!

This post brought to you by the following Sigma Life Science Bioareas

2 March 2010 0 Comments

Sigma Life Science is where bio begins

It’s with great pride that we tell you Sigma Life Science is Where bio Begins.

To quote our VP of Marketing, Dr. Helge Bastian…“We want to help life science researchers address their research challenges and are committed, more than ever to support them on their way to new and revolutionary discoveries.”

Over the past decade, Sigma Life Science has built a repertoire of products and technologies to support the biological researcher. Part of our commitment to biology is to share our knowledge and resources with you.

If you’ve been following us over the last 30+ days, you have noticed that we are using social media as a means to get to know the biological community at a whole new level. We’ll continue this trend here. As we go forward look to sigmabioblogs.com for the skinny on new techniques, improving old techniques, exciting applications, war stories from technical services, and information about scientists from all over the bio community.

Here is a video of our President, Dave Smoller, to tell you the details.

Watch the video and then check out our great tools and techniques listed below.

Thanks for talking to us. We are having fun and hope you are too.

Welcome to Sigma Life Science. This is Where Bio Begins.